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Archive for the ‘Earle Stellwagen’ Category

2013 Publications

Saturday, February 1st, 2014

The Department’s 2013 publications are now in print and mostly available online.

Sheila A. Baker

Baker SA, Kerov V. (2013) Photoreceptor inner and outer segments. Curr Top Membr. 72:231-65. DOI: 10.1016/B978-0-12-417027-8.00007-6. PMID: 24210432

Liu X, Kerov V, Haeseleer F, Majumder A, Artemyev N, Baker SA, Lee A. (2013) Dysregulation of Cav 1.4 channels disrupts the maturation of photoreceptor synaptic ribbons in congenital stationary night blindness type 2. Channels (Austin). 7(6). PMID: 24064553

Knoflach D, Kerov V, Sartori SB, Obermair GJ, Schmuckermair C, Liu X, Sothilingam V, Garrido MG, Baker SA, Glösmann M, Schicker K, Seeliger M, Lee A, Koschak A. (2013) Cav1.4 IT mouse as model for vision impairment in human congenital stationary night blindness type 2. Channels (Austin). 7(6). PMID:24051672

Pearring JN, Salinas RY, Baker SA, Arshavsky VY. (2013) Protein sorting, targeting and trafficking in photoreceptor cells. Prog Retin Eye Res. 36:24-51. DOI: 10.1016/j.preteyeres.2013.03.002. PMID: 23562855

Heather L. Bartlett

Ng B, Mathews KD, Bartlett HL. (2013) A 16-week-old infant with failure to thrive and hypotonia. Clin Pediatr (Phila).52(11):1075-8. DOI: 10.1177/0009922813502125. PMID: 24027232

Charles M. Brenner

Mei SC, Brenner C.(2013) NAD as a Genotype-Specific Drug Target. Chem Biol. 20(11):1307-8. DOI: 10.1016/j.chembiol.2013.11.001. PMID: 24267273

Fagan RL, Wu M, Chédin F, Brenner C. (2013) An ultrasensitive high throughput screen for DNA methyltransferase 1-targeted molecular probes. PLoS One. 8(11):e78752. DOI: 10.1371/journal.pone.0078752. PMID: 24236046

Kennelly PJ, Bond JS, Masters BS, Dennis EA, Brenner C, Raben DM. (2013) Desperately seeking Flexner: time to reemphasize basic science in medical education. Acad Med. 88(10):1405-6. DOI: 10.1097/ACM.0b013e3182a225be. PMID: 24064614

Ghanta S, Grossmann RE, Brenner C. (2013) Mitochondrial protein acetylation as a cell-intrinsic, evolutionary driver of fat storage: Chemical and metabolic logic of acetyl-lysine modifications. Crit Rev Biochem Mol Biol. 48(6):561-74. DOI: 10.3109/10409238.2013.838204. PMID: 24050258

Brenner C. (2013) Demystifying the Chalk Talk. ASBMB Today. 12(8):33-35.

Huang J, Stewart A, Maity B, Hagen J, Fagan RL, Yang J, Quelle DE, Brenner C, Fisher RA. (2013) RGS6 suppresses Ras-induced cellular transformation by facilitating Tip60-mediated Dnmt1 degradation and promoting apoptosis. Oncogene. DOI: 10.1038/onc.2013.324. PMID:23995786

Fagan RL, Cryderman DE, Kopelovich L, Wallrath LL, Brenner C. (2013) Laccaic acid A is a direct, DNA-competitive inhibitor of DNA methyltransferase 1. J Biol Chem. 288(33):23858-67. DOI: 10.1074/jbc.M113.480517. PMID: 23839987

Brenner C. (2013) Rethinking Premedical and Health Professional Curricula in Light of MCAT 2015. Journal of Chemical Education. 90:807-812. DOI:10.1021/ed4002738.

Trammell SAJ & Brenner C. (2013) Targeted, LCMC-Based Metabolomics for Quantitative Measurement of NAD+ Metabolites. Computational and Structural Biotechnology Journal. 4:e201301012. DOI: 10.5936/csbj.201301012.

Bogan KL & Brenner C. (2013) Biochemistry: Niacin/NAD(P). Encyclopedia of Biological Chemistry. W.J. Lennarz & M.D. Lane, eds., 3:172-178, Academic Press.

Brenner C. (2013) Changes in chemistry and biochemistry education: creative responses to medical college admissions test revisions in the age of the genome. Biochem Mol Biol Educ. 41(1):1-4. DOI: 10.1002/bmb.20653. PMID: 23281187

John M. Dagle

Kim J, Stirling KJ, Cooper ME, Ascoli M, Momany AM, McDonald EL, Ryckman KK, Rhea L, Schaa KL, Cosentino V, Gadow E, Saleme C, Shi M, Hallman M, Plunkett J, Teramo KA, Muglia LJ, Feenstra B, Geller F, Boyd HA, Melbye M, Marazita ML, Dagle JM, Murray JC. (2013) Sequence variants in oxytocin pathway genes and preterm birth: a candidate gene association study. BMC Med Genet. 14:77. DOI: 10.1186/1471-2350-14-77. PMID: 23889750

Alleman BW, Bell EF, Li L, Dagle JM, Smith PB, Ambalavanan N, Laughon MM, Stoll BJ, Goldberg RN, Carlo WA, Murray JC, Cotten CM, Shankaran S, Walsh MC, Laptook AR, Ellsbury DL, Hale EC, Newman NS, Wallace DD, Das A, Higgins RD; Eunice Kennedy Shriver National Institute of Child Health and Human Development Neonatal Research Network. (2013) Individual and center-level factors affecting mortality among extremely low birth weight infants. Pediatrics. 132(1):e175-84. DOI: 10.1542/peds.2012-3707. PMID: 23753096

Mohamed S, Murray JC, Dagle JM, Colaizy T. (2013) Hyperglycemia as a risk factor for the development of retinopathy of prematurity. BMC Pediatr. 13(1):78. PMID: 23679669

Ryckman KK, Shchelochkov OA, Cook DE, Berberich SL, Copeland S, Dagle JM, Murray JC. (2013) The influence of maternal disease on metabolites measured as part of newborn screening. J Matern Fetal Neonatal Med. 26(14):1380-3. DOI: 10.3109/14767058.2013.791267. PMID: 23550828

Ryckman KK, Dagle JM, Shchelochkov OA, Ehinger N, Poole SD, Berberich SL, Reese J, Murray JC. (2013) Association of amino acids with common complications of prematurity. Pediatr Res. 73(6):700-5. DOI: 10.1038/pr.2013.43. PMID: 23481552

Brandon S. Davies

Young SG, Yang SH, Davies BS, Jung HJ, Fong LG. (2013) Targeting protein prenylation in progeria. Sci Transl Med. 5(171):171ps3. DOI: 10.1126/scitranslmed.3005229. PMID: 23390246

Kris A. DeMali

Maiers JL, Peng X, Fanning AS, DeMali KA. (2013) ZO-1 recruitment to α-catenin–a novel mechanism for coupling the assembly of tight junctions to adherens junctions. J Cell Sci. 126(Pt 17):3904-15. DOI: 10.1242/jcs.126565. PMID: 23813953

Johnston JJ, Wen KK, Keppler-Noreuil K, McKane M, Maiers JL, Greiner A, Sapp JC; NIH Intramural Sequencing Center, DeMali KA, Rubenstein PA, Biesecker LG. (2013) Functional analysis of a de novo ACTB mutation in a patient with atypical Baraitser-Winter syndrome. Hum Mutat. 34(9):1242-9. DOI: 10.1002/humu.22350. PMID: 23649928

John E. Donelson

Yao C, Gaur Dixit U, Barker JH, Teesch LM, Love-Homan L, Donelson JE, Wilson ME. (2013) Attenuation of Leishmania infantum chagasi metacyclic promastigotes by sterol depletion. Infect Immun. 81(7):2507-17. DOI: 10.1128/IAI.00214-13. PMID: 23630964

Adrian H. Elcock

Stark AC, Andrews CT, Elcock AH. (2013) Toward optimized potential functions for protein-protein interactions in aqueous solutions: osmotic second virial coefficient calculations using the MARTINI coarse-grained force field. J Chem Theory Comput. 9(9). DOI: 10.1021/ct400008p. PMID: 24223529

Thomas AS, Mao S, Elcock AH. (2013) Flexibility of the bacterial chaperone trigger factor in microsecond-timescale molecular dynamics simulations. Biophys J. 105(3):732-44. DOI: 10.1016/j.bpj.2013.06.028. PMID: 23931321

Randak CO, Dong Q, Ver Heul AR, Elcock AH, Welsh MJ. (2013) ATP and AMP mutually influence their interaction with the ATP-binding cassette (ABC) adenylate kinase cystic fibrosis transmembrane conductance regulator (CFTR) at separate binding sites. J Biol Chem. 288(38):27692-701. DOI: 10.1074/jbc.M113.479675. PMID: 23921386

Frembgen-Kesner T, Elcock AH. (2013) Computer Simulations of the Bacterial Cytoplasm. Biophys Rev. 5(2):109-119. PMID: 23914257

Elcock AH. (2013) A molecule-centered method for accelerating the calculation of hydrodynamic interactions in Brownian dynamics simulations containing many flexible biomolecules. J Chem Theory Comput. 9(7):3224-3239. PMID: 23914146

Zhu S, Travis SM, Elcock AH. (2013) Accurate calculation of mutational effects on the thermodynamics of inhibitor binding to p38α MAP kinase: a combined computational and experimental study. J Chem Theory Comput. 9(7):3151-3164. PMID: 23914145

Andrews CT, Elcock AH. (2013) Molecular Dynamics Simulations of Highly Crowded Amino Acid Solutions: Comparisons of Eight Different Force Field Combinations with Experiment and with Each Other. J. Chem. Theory Comput. 9 (10): 4585–4602. DOI: 10.1021/ct400371h

Ernesto J. Fuentes

Willett JW, Tiwari N, Müller S, Hummels KR, Houtman JC, Fuentes EJ, Kirby JR. (2013) Specificity residues determine binding affinity for two-component signal transduction systems. MBio. 4(6):e00420-13. DOI: 10.1128/mBio.00420-13. PMID: 24194534

Joshi M, Gakhar L, Fuentes EJ. (2013) High-resolution structure of the Tiam1 PHn-CC-Ex domain. Acta Crystallogr Sect F Struct Biol Cryst Commun. 69(Pt 7):744-52. DOI: 10.1107/S1744309113014206. PMID:23832200

Liu Y, Collins C, Kiosses WB, Murray AM, Joshi M, Shepherd TR, Fuentes EJ, Tzima E. (2013) A novel pathway spatiotemporally activates Rac1 and redox signaling in response to fluid shear stress. J Cell Biol. 201(6):863-73. DOI: 10.1083/jcb.201207115. PMID: 23733346

Liu X, Shepherd TR, Murray AM, Xu Z, Fuentes EJ. (2013) The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics. Structure.21(3):342-54. DOI: 10.1016/j.str.2013.01.004. PMID: 23395182

Lokesh Gakhar

Joshi M, Gakhar L, Fuentes EJ. (2013) High-resolution structure of the Tiam1 PHn-CC-Ex domain. Acta Crystallogr Sect F Struct Biol Cryst Commun. 69(Pt 7):744-52. DOI: 10.1107/S1744309113014206. PMID: 23832200

Majumder A, Gopalakrishna KN, Cheguru P, Gakhar L, Artemyev NO. (2013) Interaction of aryl hydrocarbon receptor-interacting protein-like 1 with the farnesyl moiety. J Biol Chem. 288(29):21320-8. DOI: 10.1074/jbc.M113.476242. Epub 2013 Jun 4. PMID: 23737531

Pashkova N, Gakhar L, Winistorfer SC, Sunshine AB, Rich M, Dunham MJ, Yu L, Piper RC. (2013) The yeast Alix homolog Bro1 functions as a ubiquitin receptor for protein sorting into multivesicular endosomes. Dev Cell. 25(5):520-33. DOI: 10.1016/j.devcel.2013.04.007. PMID: 23726974

Darbro BW, Mahajan VB, Gakhar L, Skeie JM, Campbell E, Wu S, Bing X, Millen KJ, Dobyns WB, Kessler JA, Jalali A, Cremer J, Segre A, Manak JR, Aldinger KA, Suzuki S, Natsume N, Ono M, Hai HD, Viet le T, Loddo S, Valente EM, Bernardini L, Ghonge N, Ferguson PJ, Bassuk AG. (2013) Mutations in extracellular matrix genes NID1 and LAMC1 cause autosomal dominant Dandy-Walker malformation and occipital cephaloceles. Hum Mutat. 34(8):1075-9. DOI: 10.1002/humu.22351. PMID: 23674478

Pryor JM, Gakhar L, Washington MT. (2013) Structure and functional analysis of the BRCT domain of translesion synthesis DNA polymerase Rev1. Biochemistry. 52(1):254-63. DOI: 10.1021/bi301572z. PMID: 23240687

Liu Y, Bartlett JA, Di ME, Bomberger JM, Chan YR, Gakhar L, Mallampalli RK, McCray PB Jr, Di YP. (2013) SPLUNC1/BPIFA1 contributes to pulmonary host defense against Klebsiella pneumoniae respiratory infection. Am J Pathol. 182(5):1519-31. DOI: 10.1016/j.ajpath.2013.01.050. PMID: 23499554

Pamela K. Geyer

Soshnev AA, Baxley RM, Manak JR, Tan K, Geyer PK. (2013) The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary. Development. 140(17):3613-23. DOI: 10.1242/dev.094953. PMID: 23884443

Barton LJ, Pinto BS, Wallrath LL, Geyer PK. (2013) The Drosophila nuclear lamina protein otefin is required for germline stem cell survival. Dev Cell. 25(6):645-54. DOI: 10.1016/j.devcel.2013.05.023. PMID: 23806619

Theresa L. Gioannini

Shirey KA, Lai W, Scott AJ, Lipsky M, Mistry P, Pletneva LM, Karp CL, McAlees J, Gioannini TL, Weiss J, Chen WH, Ernst RK, Rossignol DP, Gusovsky F, Blanco JC, Vogel SN. (2013) The TLR4 antagonist Eritoran protects mice from lethal influenza infection. Nature. 497(7450):498-502. DOI: 10.1038/nature12118. PMID: 23636320

Teghanemt A, Weiss JP, Gioannini TL. (2013) Radioiodination of an endotoxin·MD-2 complex generates a novel sensitive, high-affinity ligand for TLR4. Innate Immun. 19(5):545-60. DOI: 10.1177/1753425913475688. PMID: 23439691

Catherine A. Musselman

Musselman CA, Gibson MD, Hartwick EW, North JA, Gatchalian J, Poirier MG, Kutateladze TG. (2013) Binding of PHF1 Tudor to H3K36me3 enhances nucleosome accessibility. Nat Commun. 4:2969. DOI: 10.1038/ncomms3969. PMID: 24352064

Andrew W. Norris

Olivier AK, Yi Y, Sun X, Sui H, Liang B, Hu S, Xie W, Fisher JT, Keiser NW, Lei D, Zhou W, Yan Z, Li G, Evans TI, Meyerholz DK, Wang K, Stewart ZA, Norris AW, Engelhardt JF. (2013) Abnormal endocrine pancreas function at birth in cystic fibrosis ferrets. J Clin Invest.122(10):3755-68. DOI: 10.1172/JCI60610. PMID:22996690

Lamping KG, Nuno DW, Coppey LJ, Holmes AJ, Hu S, Oltman CL, Norris AW, Yorek MA. (2013) Modification of high saturated fat diet with n-3 polyunsaturated fat improves glucose intolerance and vascular dysfunction. Diabetes Obes Metab.15(2):144-52. DOI: 10.1111/dom.12004. PMID: 22950668

Bryce V. Plapp

Plapp BV, Lee AT, Khanna A, Pryor JM. (2013) Bradykinetic alcohol dehydrogenases make yeast fitter for growth in the presence of allyl alcohol. Chem Biol Interact. 202(1-3):104-10. DOI: 10.1016/j.cbi.2012.11.010. PMID:23200945

Plapp BV, Kedishvili NY, Rižner TL, Maser E, O’Brien PJ. (2013) Chemico-Biological Interactions. Enzymology and molecular biology of carbonyl metabolism 16. Introduction. Chem Biol Interact. 202(1-3):1. DOI: 10.1016/j.cbi.2013.02.004. PMID: 23497822

David H. Price

Guo J, Li T, Price DH. (2013) Runaway transcription. Genome Biol. 14(9):133. PMID: 24079702

Guo J, Price DH. (2013) RNA Polymerase II Transcription Elongation Control. Chem Rev. 113(11):8583-603. DOI: 10.1021/cr400105n. PMID: 23919563

Van Duyne R, Guendel I, Jaworski E, Sampey G, Klase Z, Chen H, Zeng C, Kovalskyy D, El Kouni MH, Lepene B, Patanarut A, Nekhai S, Price DH, Kashanchi F. (2013) Effect of Mimetic CDK9 Inhibitors on HIV-1-Activated Transcription. J Mol Biol. 425(4):812-29. DOI: 10.1016/j.jmb.2012.12.005. PMID: 23247501

Miles A. Pufall

Thomas-Chollier M, Watson LC, Cooper SB, Pufall MA, Liu JS, Borzym K, Vingron M, Yamamoto KR, Meijsing SH. (2013) A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms. Proc Natl Acad Sci USA. 110(44):17826-31. DOI: 10.1073/pnas.1316235110. PMID:24127590

Pufall MA, Kaplan CD. (2013) Mechanisms of eukaryotic transcription. Genome Biol. 14(9):311. PMID: 24079829

Watson LC, Kuchenbecker KM, Schiller BJ, Gross JD, Pufall MA, Yamamoto KR. (2013) The glucocorticoid receptor dimer interface allosterically transmits sequence-specific DNA signals. Nat Struct Mol Biol. 20(7):876-83. DOI: 10.1038/nsmb.2595. PMID: 23728292

Peter A. Rubenstein

Wen KK, McKane M, Rubenstein PA. (2013) Importance of a Lys113-Glu195 intermonomer ionic bond in F-actin stabilization and regulation by yeast formins Bni1p and Bnr1p. J Biol Chem. 288(26):19140-53. DOI: 10.1074/jbc.M113.474122. PMID: 23653364

Johnston JJ, Wen KK, Keppler-Noreuil K, McKane M, Maiers JL, Greiner A, Sapp JC; NIH Intramural Sequencing Center, Demali KA, Rubenstein PA, Biesecker LG. (2013) Functional analysis of a de novo ACTB mutation in a patient with atypical Baraitser-Winter syndrome. Hum Mutat. 34(9):1242-9. DOI: 10.1002/humu.22350. PMID: 23649928

Lee CY, Lou J, Wen KK, McKane M, Eskin SG, Ono S, Chien S, Rubenstein PA, Zhu C, McIntire LV. (2013) Actin depolymerization under force is governed by lysine 113:glutamic acid 195-mediated catch-slip bonds. Proc Natl Acad Sci USA. 110(13):5022-7. DOI: 10.1073/pnas.1218407110. PMID:23460697

Debra A. Schwinn

Lei B, Schwinn DA, Morris DP. (2013) Stimulation of α1a adrenergic receptors induces cellular proliferation or antiproliferative hypertrophy dependent solely on agonist concentration. PLoS One. 8(8):e72430. DOI: 10.1371/journal.pone.0072430. PMID: 23991110

M. Ashley Spies

Whalen KL, Spies MA. (2013) Flooding enzymes: quantifying the contributions of interstitial water and cavity shape to ligand binding using extended linear response free energy calculations. J Chem Inf Model. 53(9):2349-59. DOI: 10.1021/ci400244x. PMID: 24111836

Subramanyam S, Jones WT, Spies M, Spies MA. (2013) Contributions of the RAD51 N-terminal domain to BRCA2-RAD51 interaction. Nucleic Acids Res. 41(19):9020-32. DOI: 10.1093/nar/gkt691. PMID: 23935068

Whalen KL, Chau AC, Spies MA. (2013) In silico Optimization of a Fragment-Based Hit Yields Biologically Active, High-Efficiency Inhibitors for Glutamate Racemase. ChemMedChem. DOI: 10.1002/cmdc.201300271. PMID:23929705

Spies MA. (2013) Nexus Between Protein–Ligand Affinity Rank-Ordering, Biophysical Approaches, and Drug Discovery. ACS Med. Chem. Lett. 4 (10):895–897. DOI: 10.1021/ml4003502

Maria Spies

Murfuni I, Basile G, Subramanyam S, Malacaria E, Bignami M, Spies M, Franchitto A, Pichierri P. (2013) Survival of the replication checkpoint deficient cells requires MUS81-RAD52 function. PLoS Genet. 9(10):e1003910. DOI: 10.1371/journal.pgen.1003910. PMID: 24204313

Subramanyam S, Jones WT, Spies M, Spies MA. (2013) Contributions of the RAD51 N-terminal domain to BRCA2-RAD51 interaction. Nucleic Acids Res. 41(19):9020-32. DOI: 10.1093/nar/gkt691. PMID: 23935068

Qi Z, Pugh RA, Spies M, Chemla YR. (2013) Sequence-dependent base pair stepping dynamics in XPD helicase unwinding. Elife. 2:e00334. DOI: 10.7554/eLife.00334. PMID: 23741615

Haghighat Jahromi A, Honda M, Zimmerman SC, Spies M. (2013) Single-molecule study of the CUG repeat-MBNL1 interaction and its inhibition by small molecules. Nucleic Acids Res. 41(13):6687-97. DOI: 10.1093/nar/gkt330. PMID:23661680

Masuda-Ozawa T, Hoang T, Seo YS, Chen LF, Spies M. (2013) Single-molecule sorting reveals how ubiquitylation affects substrate recognition and activities of FBH1 helicase. Nucleic Acids Res. 41(6):3576-87. DOI: 10.1093/nar/gkt056. PMID: 23393192

Spies M. (2013) DNA repair: trust but verify. Curr Biol. 23(3):R115-7. DOI: 10.1016/j.cub.2012.12.019. PMID: 23391386

Beyer DC, Ghoneim MK, Spies M. (2013) Structure and Mechanisms of SF2 DNA Helicases. Adv Exp Med Biol. 767:47-73. DOI: 10.1007/978-1-4614-5037-5_3. PMID: 23161006

Wu CG, Spies M. (2013) Overview: what are helicases? Adv Exp Med Biol. 767:1-16. DOI: 10.1007/978-1-4614-5037-5_1. PMID: 23161004

Earle Stellwagen

Stellwagen E, Peters JP, Maher LJ 3rd, Stellwagen NC. (2013) DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations. Biochemistry. 52(24):4138-48. DOI: 10.1021/bi400118m. PMID: 23675817

Nancy C. Stellwagen

Stellwagen E, Peters JP, Maher LJ 3rd, Stellwagen NC. (2013) DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations. Biochemistry. 52(24):4138-48. DOI: 10.1021/bi400118m. PMID: 23675817

Eric B. Taylor

Gray LR, Tompkins SC, Taylor EB. (2013) Regulation of pyruvate metabolism and human disease. Cell Mol Life Sci. PMID:24363178

Lori L. Wallrath

Fagan RL, Cryderman DE, Kopelovich L, Wallrath LL, Brenner C. (2013) Laccaic acid A is a direct, DNA-competitive inhibitor of DNA methyltransferase 1. J Biol Chem. 288(33):23858-67. DOI: 10.1074/jbc.M113.480517. PMID: 23839987

Barton LJ, Pinto BS, Wallrath LL, Geyer PK. (2013) The Drosophila nuclear lamina protein otefin is required for germline stem cell survival. Dev Cell. 25(6):645-54. DOI: 10.1016/j.devcel.2013.05.023. PMID: 23806619

Zwerger M, Jaalouk DE, Lombardi ML, Isermann P, Mauermann M, Dialynas G, Herrmann H, Wallrath LL, Lammerding J. (2013) Myopathic lamin mutations impair nuclear stability in cells and tissue and disrupt nucleo-cytoskeletal coupling. Hum Mol Genet. 22(12):2335-49. DOI: 10.1093/hmg/ddt079. PMID: 23427149

M. Todd Washington

Dieckman LM, Boehm EM, Hingorani MM, Washington MT. (2013) Distinct structural alterations in proliferating cell nuclear antigen block DNA mismatch repair. Biochemistry. 52(33):5611-9. DOI: 10.1021/bi400378e. PMID: 23869605

Dieckman LM, Washington MT. (2013) PCNA trimer instability inhibits translesion synthesis by DNA polymerase η and by DNA polymerase δ. DNA Repair (Amst). 12(5):367-76. DOI: 10.1016/j.dnarep.2013.02.007. PMID: 23506842

Pryor JM, Gakhar L, Washington MT. (2013) Structure and functional analysis of the BRCT domain of translesion synthesis DNA polymerase Rev1. Biochemistry. 52(1):254-63. DOI: 10.1021/bi301572z. PMID:23240687

Ronald J. Weigel

Bhama AR, Smith RJ, Robinson RA, Weigel RJ, Sugg SL, Howe JR, Lal G. (2013) Preoperative evaluation of thyroglossal duct cysts: children versus adults-is there a difference? Am J Surg. PII: S0002-9610(13)00612-0. DOI: 10.1016/j.amjsurg.2013.06.018. PMID: 24246260

Spanheimer PM, Cyr AR, Gillum MP, Woodfield GW, Askeland RW, Weigel RJ. (2013) Distinct Pathways Regulated by RET and Estrogen Receptor in Luminal Breast Cancer Demonstrate the Biological Basis for Combination Therapy. Ann Surg. PMID: 24045439

Lal G, Contreras PG, Kulak M, Woodfield G, Bair T, Domann FE, Weigel RJ. (2013) Human Melanoma cells over-express extracellular matrix 1 (ECM1) which is regulated by TFAP2C. PLoS One. 8(9):e73953. DOI: 10.1371/journal.pone.0073953. PMID: 24023917

Lizarraga IM, Sugg SL, Weigel RJ, Scott-Conner CE. (2013) Review of risk factors for the development of contralateral breast cancer. Am J Surg. 206(5):704-8. DOI: 10.1016/j.amjsurg.2013.08.002. PMID: 24016706

Spanheimer PM, Stoltze AJ, Howe JR, Sugg SL, Lal G, Weigel RJ . (2013) Do giant parathyroid adenomas represent a distinct clinical entity? Surgery. 154(4):714-8; discussion 718-9. DOI: 10.1016/j.surg.2013.05.013. PMID: 23978594

Lizarraga IM, Scott-Conner CE, Muzahir S, Weigel RJ, Graham MM, Sugg SL. (2013) Management of contralateral axillary sentinel lymph nodes detected on lymphoscintigraphy for breast cancer. Ann Surg Oncol. 20(10):3317-22. DOI: 10.1245/s10434-013-3151-y. PMID: 23975295

Carr JC, Spanheimer PM, Rajput M, Dahdaleh FS, Lal G, Weigel RJ, Sugg SL, Liao J, Howe JR. (2013) Discriminating pheochromocytomas from other adrenal lesions: the dilemma of elevated catecholamines. Ann Surg Oncol. 20(12):3855-61. DOI: 10.1245/s10434-013-3142-z. PMID: 23884753

Spanheimer PM, Askeland RW, Kulak MV, Wu T, Weigel RJ. (2013) High TFAP2C/low CD44 expression is associated with an increased rate of pathologic complete response following neoadjuvant chemotherapy in breast cancer. J Surg Res. 184(1):519-25. DOI: 10.1016/j.jss.2013.04.042. PMID: 23764310

Spanheimer PM, Carr JC, Thomas A, Sugg SL, Scott-Conner CE, Liao J, Weigel RJ. (2013) The response to neoadjuvant chemotherapy predicts clinical outcome and increases breast conservation in advanced breast cancer. Am J Surg. 206(1):2-7. DOI: 10.1016/j.amjsurg.2012.10.025. PMID: 23375759

Kulak MV, Cyr AR, Woodfield GW, Bogachek M, Spanheimer PM, Li T, Price DH, Domann FE, Weigel RJ. (2013) Transcriptional regulation of the GPX1 gene by TFAP2C and aberrant CpG methylation in human breast cancer. Oncogene. 32(34):4043-51. DOI: 10.1038/onc.2012.400. PMID: 22964634

Spanheimer PM, Woodfield GW, Cyr AR, Kulak MV, White-Baer LS, Bair TB, Weigel RJ. (2013) Expression of the RET Proto-oncogene Is Regulated by TFAP2C in Breast Cancer Independent of the Estrogen Receptor. Ann Surg Oncol. 20(7):2204-12. DOI: 10.1245/s10434-012-2570-5. PMID:22878616

Meng Wu

Fagan RL, Wu M, Chédin F, Brenner C. (2013) An ultrasensitive high throughput screen for DNA methyltransferase 1-targeted molecular probes. PLoS One. 8(11):e78752. DOI: 10.1371/journal.pone.0078752. PMID: 24236046

Storaska AJ, Mei JP, Wu M, Li M, Wade SM, Blazer LL, Sjögren B, Hopkins CR, Lindsley CW, Lin Z, Babcock JJ, McManus OB, Neubig RR. (2013) Reversible inhibitors of regulators of G-protein signaling identified in a high-throughput cell-based calcium signaling assay. Cell Signal. 25(12):2848-55. DOI: 10.1016/j.cellsig.2013.09.007. PMID: 24041654

Yu H, Lin Z, Mattmann ME, Zou B, Terrenoire C, Zhang H, Wu M, McManus OB, Kass RS, Lindsley CW, Hopkins CR, Li M.( 2013) Dynamic subunit stoichiometry confers a progressive continuum of pharmacological sensitivity by KCNQ potassium channels. Proc Natl Acad Sci USA. 110(21):8732-7. DOI: 10.1073/pnas.1300684110. PMID:23650380

Liping Yu

Yu L, Fink BD, Herlein JA, Sivitz WI. (2013) Mitochondrial function in diabetes: novel methodology and new insight. Diabetes. 62(6):1833-42. DOI: 10.2337/db12-1152. PMID: 23328129.

Pashkova N, Gakhar L, Winistorfer SC, Sunshine AB, Rich M, Dunham MJ, Yu L, Piper RC. (2013) The yeast Alix homolog Bro1 functions as a ubiquitin receptor for protein sorting into multivesicular endosomes. Dev Cell. 25(5):520-33. DOI: 10.1016/j.devcel.2013.04.007. PMID: 23726974.

Yoshida-Moriguchi T, Willer T, Anderson ME, Venzke D, Whyte T, Muntoni F, Lee H, Nelson SF, Yu L, Campbell KP. (2013) SGK196 is a glycosylation-specific O-mannose kinase required for dystroglycan function. Science. 341(6148):896-9. DOI: 10.1126/science.1239951. PMID: 23929950.

Yu L, Fink BD, Herlein JA, Oltman CL, Lamping KG, Sivitz WI. (2013) Dietary fat, fatty acid saturation and mitochondrial bioenergetics. J Bioenerg Biomembr. PMID: 24121995.

Peterson TA, Yu L, Piper RC. (2013) Backbone and side-chain NMR assignments for the C-terminal domain of mammalian Vps28. Biomol NMR Assign. PMID: 24366722.

Highlights from the 65th Anniversary and 4th Annual Retreat

Monday, August 26th, 2013

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The 2013 Biochemistry 65th Anniversary and 4th Annual Retreat, organized by Lori Wallrath, Charles Brenner, Maria Spies, Earle Stellwagen, Mark Miller, Lacy Barton, and Maren Rogers, was held on Saturday, August 24. The scientific program at the Levitt Center for University Advancement featured talks by Charles Brenner and Catherine Musselman, Director of the Fraternal Order of Eagles Diabetes Research Center, Dale Abel, and Director of the Iowa Institute of Human Genetics, Richard Smith. In addition, Gary Firestone (1980 PhD with Ed Heath), Tristram Parslow (1977 MD/PhD with Daryl Granner), Bob Deschenes (faculty from 1989-2004),  and Debbie Thurmond (1997 PhD with Alan Goodridge) gave scientific presentations.

The poster session featured 39 posters. Six total awards were given in three categories. In the undergraduate division, first place went to Dylan Thiemann (Wallrath lab), and second place to Liam Hovey (Shea lab). In the Postdoc/Research Assistant/Associate category, Jiannan Guo (Price lab) and Rebecca Fagan (Brenner lab) won first and second places, respectively . Two Lois Bigger Gehring Awards were given to support graduate student travel to research conferences. Lacy Barton (Geyer lab) and Jessica Maiers (DeMali lab) each won this award for best poster in the graduate student category.

The dinner at the Athletics Hall of Fame featured thoughts and reflections from PhD graduates of the department, including Morey Slodki (1955), Charles Fishkin (son of Arthur Fishkin, 1957), Billy Hudson (1966), Liskin Swint-Kruse (1995), and a video message from Alap Subramanian (1964). Along with former faculty members Charles Swenson, Robert Barker, Earle Stellwagen, Arthur Spector, Bryce Plapp, Robert Roskoski, Larry Solomonson, Alice Fulton, and Daryl Granner.

Thanks to everyone for participating.

Stellwagen article highlighted on Biochemistry home page

Monday, June 17th, 2013

A recent article by Drs. Earle and Nancy Stellwagen will be featured on the Biochemistry home page after it’s print publication date. The article, entitled “DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations,”  is currently available online, and will be featured here once it goes to print.

Department fetes Nancy and Earle Stellwagen

Monday, April 16th, 2012

Biochemists gathered on April 14 at Blackstone in Iowa City to celebrate the numerous contributions that Nancy and Earle Stellwagen have made to the Department of Biochemistry, the University of Iowa, and the scientific community during their careers. Charles Brenner read a letter written by Dr. Bob Kelley, a 1984 PhD student of Earl’s, who is nowa Senior Scientist in the Antibody Engineering Department ant Genentech. Dr. Kelly detailed his time in the lab with Ealre, as well as with Nancy, both of whom he praised for their mentorship and scientific rigor. Bryce Plapp read a letter by Dr. Larry Barnes, a former postdoctoral fellow in Earle’s lab, who is currently a Professor at UT Health Science Center. Dr. Barnes stated that his strengths in protein purification/analysis and management skills that he used throughout his career are a direct result of the excellent training provided by the Stellwagens.

The Stellwagens were delighted that their three children, Anne, John and David, returned to IOwa City for the celebration.

Stellwagen Family

Susan O’Donnell wins the Clarence Berg Award

Monday, August 30th, 2010

Susan O’Donnell, who recently completed her PhD with Madeline Shea, has been named the winner of the 2010 Clarence Berg Award. This prize is given every other year to a student who demonstrates “scholarship, integrity, cooperativeness, consideration and a willingness to help others.” Dr. O’Donnell was an American Heart Association-funded graduate student who focused on the structural and thermodynamic bases for recognition of calcineurin by calmodulin domains. Previously, Susan was the winner of the 2006 Usha Balakrishnan Award for best poster presented at the annual meeting of the Center for Biocatalysis and Bioprocessing. She also presented her work in a plenary session of the 2007 Gibbs Conference on Biothermodynamics and received a 2008 Biophysical Society Student Research Achievement Award as well as an inaugural Gehring Award last fall.

Dr. O’Donnell is currently a post-doctoral fellow with Robert Deschenes at University of South Florida.

Susan is the 21st winner of the Berg Award, which was established by former students of Professor Berg, an internationally known amino acid biochemist who was a member of the department for 39 years. Dr. Berg is well known as the author of the 1980 book, The University of Iowa and Biochemistry from their Beginnings.

Prior winners of the Berg Award are:

Clarence Berg’s history of Iowa Biochemistry now online

Wednesday, January 6th, 2010

Thanks to an agreement between Google and The University of Iowa, the late Clarence Peter Berg’s 1980 out of print monograph, The University of Iowa and Biochemistry from their Beginnings, is now available online. (more…)

2009 Publications

Wednesday, December 30th, 2009

The Department’s 2009 publications are now in print and mostly available online. There are papers in Nature, Cell, PNAS, EMBO J, JACS, Genetics, Methods in Enzymology, Methods, Mol Biochem Parasitol, Nucleic Acids Res, PLoS One, Human Molecular Genetics, Pediatrics, J Cell Sci, J Immunology, J Lipids Res, Clinical Cancer Res, and, of course, JBC and Biochemistry. (more…)